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Services

Access to our computing devices are possible only through the use of docker for the moment. Training is available upon request and is previewed on this RPBS webpage, in french (http://bioserv.rpbs.univ-paris-diderot.fr/tutorials.html)

The aims of our bioinformatics platform are to:

  • Provide access to computing ressources devoted to NGS analysis
  • Maintain and disseminate tools, pipelines and databases developed by users (RNA-seq analysis, ChIP-seq analysis, Genome-Wide Detection of Horizontal Gene Transfer events)
  • Promote collaboration and exchange of knowledge
  • Organize training

All analyses are conducted by users through docker containers and sbatch scripts.

Available docker images on the cluster with their own sbatch scripts:

  • ngs_utils_t_1_0
  • stringtie_1_2_3_t1
  • ncblacome_bam2wig_2_6_t3 
  • picard_tools_1_119_t1
  • gatk_3_5_t1
  • nc_bc_fastqc_0_11_5
  • hgtdock
  • nc_bc_samtools0_1_19
  • nc_bc_htseq
  • nc_bc_bowtie2
  • nc_bc_tophat_2_1_0