BioInformatics Platform

Team Leader :
Magali HENNION

Welcome to Epigenetics and Cell Fate BIBS – Bioinformatics and Biostatistics – core facility webpage.

Mission statement

BIBS core facility develops user-friendly, state of the art epigenomics analysis protocols. We also maintain access to a local computing cluster and provide the teams of UMR7216 lab a variety of bioinformatic related services such as technology monitoring, project-specific analyses and user-tailored, on-demand training.

BIBS core facility aims

  • Provide access to computing resources devoted to NGS analysis.
  • Maintain and disseminate tools, pipelines and databases developed by users (RNA-seq analysis, ChIP-seq analysis, Ribosome profiling, etc.)
  • Install and maintain containerized version of NGS tools.
  • Develop analyses workflows (Snakemake and NextFlow).
  • Promote collaboration and exchange of knowledge.
  • Organize training.

How to access the platform

To discuss and set-up a project with BIBS core facility, please fill-in the form available here and send it Magali Hennion. A meeting to discuss your needs will be set-up in the following days.

Access to our computing devices is possible upon request. The cluster needs the use of Docker or Singularity containers. If needed, the facility can train you. Documentation is available on our website.

Our protocols, scripts and workflows are hosted on our GitHub repository. Some of the resources are private, please provide your GitHub Username to Magali Hennion to get access.

BIBS core facility website

Please find more information on our website : https://parisepigenetics.github.io/umr7216bioinfofacility/